Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
CXCL1P09341 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC11.26□□□□□ -0.61
CXCL1P09341 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC11.26□□□□□ -0.61
CXCL1P09341 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC11.26□□□□□ -0.61
CXCL1P09341 LITAF-210ENST00000571976 548 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 LITAF-214ENST00000574703 486 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 FAM197Y3-203ENST00000618346 717 ntBASIC11.26□□□□□ -0.61
CXCL1P09341 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 AC073862.5-201ENST00000624129 2027 ntBASIC11.26□□□□□ -0.61
CXCL1P09341 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 ZNF259P1-201ENST00000407656 1365 ntBASIC11.26□□□□□ -0.61
CXCL1P09341 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 CCDC114-201ENST00000315396 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 FAM198B-207ENST00000592057 3425 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CXCL1P09341 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CXCL1P09341 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 AC015922.1-201ENST00000421102 1152 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 AC069335.1-201ENST00000489972 472 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 TSFM-210ENST00000550559 897 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC11.25□□□□□ -0.61
CXCL1P09341 PRR29-209ENST00000582540 967 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 AC074044.1-201ENST00000609673 707 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 AC018529.1-201ENST00000613063 361 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 IRF5-214ENST00000613821 595 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 MIR6069-201ENST00000620069 79 ntBASIC11.25□□□□□ -0.61
CXCL1P09341 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 CAND2-206ENST00000626378 333 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC11.25□□□□□ -0.61
CXCL1P09341 PHYHIP-201ENST00000321613 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CXCL1P09341 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC11.25□□□□□ -0.61
CXCL1P09341 FAM230B-208ENST00000451257 3566 ntTSL 5 BASIC11.25□□□□□ -0.61
CXCL1P09341 SEPT10-202ENST00000397712 3071 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms