Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 MIR4750-201ENST00000584564 56 ntBASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AL133467.4-201ENST00000602953 725 ntBASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AL390755.1-201ENST00000623716 2027 ntBASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AC006372.4-201ENST00000624122 1543 ntBASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 HSPA8P5-201ENST00000456928 2069 ntBASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 IL9RP3-201ENST00000442856 1674 ntBASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AL512306.1-201ENST00000432698 848 ntBASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AL161773.1-201ENST00000624845 863 ntBASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.29■□□□□ 0.04
PAAF1Q9BRP4 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 GUSBP10-201ENST00000417412 665 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AC005740.1-201ENST00000515639 522 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms