Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ERCC4Q92889 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 AC134312.5-201ENST00000568031 1313 ntBASIC16.5■□□□□ 0.23
ERCC4Q92889 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ERCC4Q92889 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.5■□□□□ 0.23
ERCC4Q92889 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.5■□□□□ 0.23
ERCC4Q92889 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.5■□□□□ 0.23
ERCC4Q92889 MIR6074-201ENST00000612054 107 ntBASIC16.5■□□□□ 0.23
ERCC4Q92889 ENPP7P14-201ENST00000621765 1040 ntBASIC16.5■□□□□ 0.23
ERCC4Q92889 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 AL590440.2-201ENST00000641973 1595 ntBASIC16.5■□□□□ 0.23
ERCC4Q92889 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC4Q92889 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
ERCC4Q92889 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
ERCC4Q92889 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC4Q92889 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.49■□□□□ 0.23
ERCC4Q92889 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.49■□□□□ 0.23
ERCC4Q92889 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.49■□□□□ 0.23
ERCC4Q92889 AP003171.2-201ENST00000528208 925 ntBASIC16.49■□□□□ 0.23
ERCC4Q92889 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 SORD2P-201ENST00000558556 1069 ntBASIC16.49■□□□□ 0.23
ERCC4Q92889 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.49■□□□□ 0.23
ERCC4Q92889 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.49■□□□□ 0.23
ERCC4Q92889 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.49■□□□□ 0.23
ERCC4Q92889 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC4Q92889 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ERCC4Q92889 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC4Q92889 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC16.48■□□□□ 0.23
ERCC4Q92889 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC4Q92889 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.48■□□□□ 0.23
ERCC4Q92889 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC4Q92889 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms