Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17.21■□□□□ 0.35
SNED1Q8TER0 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17.21■□□□□ 0.35
SNED1Q8TER0 ESR1-214ENST00000638569 132 ntTSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 RPL13AP3-202ENST00000494676 1473 ntBASIC17.21■□□□□ 0.35
SNED1Q8TER0 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.21■□□□□ 0.35
SNED1Q8TER0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNED1Q8TER0 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SNED1Q8TER0 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SNED1Q8TER0 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
SNED1Q8TER0 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 MIR6074-201ENST00000612054 107 ntBASIC17.21■□□□□ 0.34
SNED1Q8TER0 PTPN20CP-201ENST00000614090 920 ntBASIC17.21■□□□□ 0.34
SNED1Q8TER0 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SNED1Q8TER0 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
SNED1Q8TER0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 CICP24-201ENST00000605464 2705 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AC103592.1-201ENST00000394513 664 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AC104961.1-201ENST00000427605 771 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 VENTXP4-201ENST00000449029 958 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AC023906.1-201ENST00000486386 453 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AC010531.8-201ENST00000623341 685 ntBASIC17.2■□□□□ 0.34
SNED1Q8TER0 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.2■□□□□ 0.34
SNED1Q8TER0 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNED1Q8TER0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms