Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 AC005730.2-201ENST00000564549 1184 ntBASIC13.7□□□□□ -0.22
RAE1P78406 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.7□□□□□ -0.22
RAE1P78406 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.7□□□□□ -0.22
RAE1P78406 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RAE1P78406 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.7□□□□□ -0.22
RAE1P78406 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RAE1P78406 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
RAE1P78406 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.7□□□□□ -0.22
RAE1P78406 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.7□□□□□ -0.22
RAE1P78406 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
RAE1P78406 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.69□□□□□ -0.22
RAE1P78406 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
RAE1P78406 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.69□□□□□ -0.22
RAE1P78406 YBX1P6-201ENST00000442962 1002 ntBASIC13.69□□□□□ -0.22
RAE1P78406 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 RPSAP36-202ENST00000494591 1261 ntBASIC13.69□□□□□ -0.22
RAE1P78406 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.69□□□□□ -0.22
RAE1P78406 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 AC009542.2-202ENST00000619004 1067 ntBASIC13.69□□□□□ -0.22
RAE1P78406 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 AC133540.1-201ENST00000620845 1019 ntBASIC13.69□□□□□ -0.22
RAE1P78406 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.69□□□□□ -0.22
RAE1P78406 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.69□□□□□ -0.22
RAE1P78406 COX11-210ENST00000639671 696 ntBASIC13.69□□□□□ -0.22
RAE1P78406 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.69□□□□□ -0.22
RAE1P78406 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.69□□□□□ -0.22
RAE1P78406 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RAE1P78406 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RAE1P78406 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 AC063926.2-201ENST00000623766 1308 ntBASIC13.68□□□□□ -0.22
RAE1P78406 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.68□□□□□ -0.22
RAE1P78406 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.68□□□□□ -0.22
RAE1P78406 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
RAE1P78406 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RAE1P78406 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.68□□□□□ -0.22
RAE1P78406 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms