Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 AC004899.1-201ENST00000424687 1714 ntBASIC13.76□□□□□ -0.21
LIM2P55344 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 CYP4F23P-201ENST00000593402 1579 ntBASIC13.75□□□□□ -0.21
LIM2P55344 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LIM2P55344 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LIM2P55344 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 AC007274.1-201ENST00000439805 662 ntBASIC13.75□□□□□ -0.21
LIM2P55344 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.75□□□□□ -0.21
LIM2P55344 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.75□□□□□ -0.21
LIM2P55344 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.75□□□□□ -0.21
LIM2P55344 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.75□□□□□ -0.21
LIM2P55344 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 AC008805.1-201ENST00000590892 364 ntBASIC13.75□□□□□ -0.21
LIM2P55344 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 AL008638.5-201ENST00000623814 1298 ntBASIC13.75□□□□□ -0.21
LIM2P55344 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
LIM2P55344 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LIM2P55344 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LIM2P55344 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 AC020910.6-201ENST00000623084 1459 ntBASIC13.74□□□□□ -0.21
LIM2P55344 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 FAM86MP-201ENST00000340703 885 ntBASIC13.74□□□□□ -0.21
LIM2P55344 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms