Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
CDH6P55285 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CDH6P55285 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH6P55285 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH6P55285 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH6P55285 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH6P55285 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH6P55285 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDH6P55285 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH6P55285 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.1■□□□□ 0.01
CDH6P55285 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.1■□□□□ 0.01
CDH6P55285 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 OR8S1-201ENST00000310194 1080 ntBASIC15.1■□□□□ 0.01
CDH6P55285 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 AC099336.1-201ENST00000417053 1171 ntBASIC15.1■□□□□ 0.01
CDH6P55285 HLA-V-201ENST00000429037 534 ntBASIC15.1■□□□□ 0.01
CDH6P55285 CSF2RBP1-201ENST00000447905 391 ntBASIC15.1■□□□□ 0.01
CDH6P55285 KRT223P-202ENST00000449164 1292 ntBASIC15.1■□□□□ 0.01
CDH6P55285 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 AC009955.4-201ENST00000597192 544 ntBASIC15.1■□□□□ 0.01
CDH6P55285 MIR6720-201ENST00000611664 98 ntBASIC15.1■□□□□ 0.01
CDH6P55285 COX11-210ENST00000639671 696 ntBASIC15.1■□□□□ 0.01
CDH6P55285 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 AL022313.4-201ENST00000562756 2046 ntBASIC15.1■□□□□ 0.01
CDH6P55285 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDH6P55285 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH6P55285 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH6P55285 AC244394.1-201ENST00000435000 1665 ntBASIC15.09■□□□□ 0.01
CDH6P55285 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.09■□□□□ 0.01
CDH6P55285 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 CICP4-201ENST00000447359 2812 ntBASIC15.09■□□□□ 0.01
CDH6P55285 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 AC131212.3-201ENST00000624087 4219 ntBASIC15.09■□□□□ 0.01
CDH6P55285 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CDH6P55285 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CDH6P55285 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH6P55285 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CDH6P55285 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.09■□□□□ 0.01
CDH6P55285 AC079178.1-201ENST00000420915 656 ntBASIC15.09■□□□□ 0.01
CDH6P55285 AL157407.1-201ENST00000435784 904 ntBASIC15.09■□□□□ 0.01
CDH6P55285 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH6P55285 AL645933.1-201ENST00000440087 609 ntBASIC15.09■□□□□ 0.01
CDH6P55285 YBX1P6-201ENST00000442962 1002 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms