Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.94□□□□□ -0.5
NKX2-1P43699 AC004967.1-201ENST00000453589 447 ntBASIC11.94□□□□□ -0.5
NKX2-1P43699 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC11.94□□□□□ -0.5
NKX2-1P43699 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 AC026410.3-201ENST00000514280 936 ntBASIC11.94□□□□□ -0.5
NKX2-1P43699 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC11.94□□□□□ -0.5
NKX2-1P43699 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 AC131206.1-201ENST00000538078 1211 ntBASIC11.94□□□□□ -0.5
NKX2-1P43699 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 METTL23-205ENST00000588302 925 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC11.94□□□□□ -0.5
NKX2-1P43699 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 SPDYE12P-201ENST00000618416 771 ntBASIC11.94□□□□□ -0.5
NKX2-1P43699 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 AL139385.1-201ENST00000611744 3272 ntBASIC11.93□□□□□ -0.5
NKX2-1P43699 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.93□□□□□ -0.5
NKX2-1P43699 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC11.93□□□□□ -0.5
NKX2-1P43699 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC11.93□□□□□ -0.5
NKX2-1P43699 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.93□□□□□ -0.5
NKX2-1P43699 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
NKX2-1P43699 AC044860.1-202ENST00000559481 777 ntBASIC11.93□□□□□ -0.5
NKX2-1P43699 AC092337.1-201ENST00000568699 1129 ntBASIC11.93□□□□□ -0.5
NKX2-1P43699 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 AC134684.3-201ENST00000641758 218 ntBASIC11.93□□□□□ -0.5
NKX2-1P43699 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
NKX2-1P43699 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
NKX2-1P43699 STK3-218ENST00000617590 2485 ntTSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
NKX2-1P43699 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.92□□□□□ -0.5
NKX2-1P43699 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms