Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 AC093462.1-201ENST00000621167 1683 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 AIG1-203ENST00000367596 559 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL18A1P39060 MIR632-201ENST00000385193 94 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 AC098657.1-201ENST00000416270 1135 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 ALG1L15P-201ENST00000482834 794 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 AC099328.1-201ENST00000498809 1030 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC18.36■□□□□ 0.53
COL18A1P39060 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC18.36■□□□□ 0.53
COL18A1P39060 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC18.36■□□□□ 0.53
COL18A1P39060 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL18A1P39060 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 TUBB4AP1-201ENST00000450755 1325 ntBASIC18.36■□□□□ 0.53
COL18A1P39060 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL18A1P39060 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL18A1P39060 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC18.35■□□□□ 0.53
COL18A1P39060 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.35■□□□□ 0.53
COL18A1P39060 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 HSD3BP1-201ENST00000286193 1111 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
COL18A1P39060 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC18.35■□□□□ 0.53
COL18A1P39060 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL18A1P39060 CCND3P1-201ENST00000438347 580 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC18.35■□□□□ 0.53
COL18A1P39060 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC18.35■□□□□ 0.53
COL18A1P39060 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
COL18A1P39060 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL18A1P39060 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC18.35■□□□□ 0.53
COL18A1P39060 CICP24-201ENST00000605464 2705 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC18.35■□□□□ 0.53
COL18A1P39060 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 AC015802.1-201ENST00000588104 1449 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
COL18A1P39060 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC18.35■□□□□ 0.53
COL18A1P39060 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL18A1P39060 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC18.35■□□□□ 0.53
COL18A1P39060 AL121949.3-201ENST00000406684 385 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 DPY19L2P4-201ENST00000479881 442 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 RPSAP70-201ENST00000504462 864 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC18.35■□□□□ 0.53
COL18A1P39060 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC18.35■□□□□ 0.53
COL18A1P39060 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC18.35■□□□□ 0.53
COL18A1P39060 AC048382.6-201ENST00000621980 1223 ntBASIC18.35■□□□□ 0.53
COL18A1P39060 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL18A1P39060 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 AL513477.1-201ENST00000602865 2407 ntBASIC18.34■□□□□ 0.53
COL18A1P39060 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC18.34■□□□□ 0.53
COL18A1P39060 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 GH1-203ENST00000351388 685 ntTSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC18.34■□□□□ 0.53
COL18A1P39060 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC18.34■□□□□ 0.53
COL18A1P39060 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC18.34■□□□□ 0.53
COL18A1P39060 AC092910.2-201ENST00000491262 348 ntBASIC18.34■□□□□ 0.53
COL18A1P39060 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC18.34■□□□□ 0.53
COL18A1P39060 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC18.34■□□□□ 0.53
COL18A1P39060 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC18.34■□□□□ 0.53
COL18A1P39060 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms