Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 FAM90A12P-201ENST00000519497 2375 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 FAM90A24P-201ENST00000520792 2369 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 MESTP3-201ENST00000503460 968 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AC138466.3-201ENST00000619983 221 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 ENPP7P14-201ENST00000621765 1040 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 APP-205ENST00000358918 2366 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AC139712.1-201ENST00000378256 1875 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DMBP28068 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC134312.5-201ENST00000568031 1313 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 KHSRPP1-201ENST00000427983 1768 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 USP31-203ENST00000567975 2142 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms