Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC253536.4-201ENST00000440539 267 ntBASIC12.36□□□□□ -0.43
USF1P22415 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 HLA-J-204ENST00000495278 958 ntBASIC12.36□□□□□ -0.43
USF1P22415 IGLV3-15-201ENST00000518356 244 ntBASIC12.36□□□□□ -0.43
USF1P22415 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 RTN3P1-201ENST00000536295 711 ntBASIC12.36□□□□□ -0.43
USF1P22415 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
USF1P22415 AC009779.1-201ENST00000551138 283 ntBASIC12.36□□□□□ -0.43
USF1P22415 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.36□□□□□ -0.43
USF1P22415 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC12.36□□□□□ -0.43
USF1P22415 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 U62317.3-201ENST00000608319 855 ntBASIC12.36□□□□□ -0.43
USF1P22415 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
USF1P22415 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 AC007686.3-201ENST00000619017 3487 ntBASIC12.36□□□□□ -0.43
USF1P22415 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 MIR193BHG-211ENST00000641433 5365 ntBASIC12.36□□□□□ -0.43
USF1P22415 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 AC006480.2-201ENST00000609770 1337 ntBASIC12.36□□□□□ -0.43
USF1P22415 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.35□□□□□ -0.43
USF1P22415 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 AC232323.1-201ENST00000540724 2099 ntBASIC12.35□□□□□ -0.43
USF1P22415 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 LDHBP1-201ENST00000455730 1119 ntBASIC12.35□□□□□ -0.43
USF1P22415 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 FADS2-212ENST00000522639 360 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 CCNC-217ENST00000523985 958 ntTSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 FADS2-215ENST00000574708 385 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 NAT9-224ENST00000583757 583 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 AF254983.2-201ENST00000612331 135 ntBASIC12.35□□□□□ -0.43
USF1P22415 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 AC006453.1-201ENST00000636037 1257 ntBASIC12.35□□□□□ -0.43
USF1P22415 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.35□□□□□ -0.43
USF1P22415 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.35□□□□□ -0.43
USF1P22415 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
USF1P22415 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
USF1P22415 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms