Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC14.79□□□□□ -0.04
COL9A1P20849 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 AC015849.4-201ENST00000603678 421 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL9A1P20849 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.78□□□□□ -0.04
COL9A1P20849 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.78□□□□□ -0.04
COL9A1P20849 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 AL136172.1-201ENST00000598590 1394 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 MIR339-201ENST00000362153 94 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 PGAM1P11-201ENST00000416729 680 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.78□□□□□ -0.04
COL9A1P20849 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.78□□□□□ -0.04
COL9A1P20849 XBP1P1-201ENST00000436573 652 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 RN7SL578P-201ENST00000477781 283 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.78□□□□□ -0.04
COL9A1P20849 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.78□□□□□ -0.04
COL9A1P20849 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC14.78□□□□□ -0.04
COL9A1P20849 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 MIR6819-201ENST00000622122 61 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.78□□□□□ -0.04
COL9A1P20849 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.78□□□□□ -0.04
COL9A1P20849 ACE3P-201ENST00000423435 1973 ntBASIC14.78□□□□□ -0.04
COL9A1P20849 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
COL9A1P20849 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL9A1P20849 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL9A1P20849 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
COL9A1P20849 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.77□□□□□ -0.04
COL9A1P20849 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.77□□□□□ -0.04
COL9A1P20849 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
COL9A1P20849 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
COL9A1P20849 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 KRT8P28-201ENST00000433288 1390 ntBASIC14.77□□□□□ -0.04
COL9A1P20849 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL9A1P20849 AC106785.2-201ENST00000564385 1319 ntBASIC14.77□□□□□ -0.04
COL9A1P20849 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
COL9A1P20849 RNA5SP359-201ENST00000364838 113 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 IFNWP2-201ENST00000431203 580 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.77□□□□□ -0.05
COL9A1P20849 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 CDK4P1-201ENST00000454213 828 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 SNRPD2P2-201ENST00000473818 333 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC14.77□□□□□ -0.05
COL9A1P20849 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 ACY3-202ENST00000529256 933 ntTSL 3 BASIC14.77□□□□□ -0.05
COL9A1P20849 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL9A1P20849 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms