Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC012617.1-204ENST00000586340 2305 ntBASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 TLE1P1-201ENST00000422965 589 ntBASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC011495.1-201ENST00000498085 584 ntBASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC010319.3-201ENST00000597028 470 ntBASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 SALL4P5-201ENST00000419001 1760 ntBASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 AC068587.3-201ENST00000526613 355 ntBASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC39Q9UFE4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 CES1P1-201ENST00000421606 1704 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 FO681548.1-201ENST00000455617 1132 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 RN7SL752P-201ENST00000463779 287 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 MIR5189-201ENST00000577370 114 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 AC145423.3-201ENST00000615987 467 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms