Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC104581.4-201ENST00000623126 3052 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 CROCCP4-201ENST00000457096 498 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC023310.1-201ENST00000554836 735 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC005225.4-201ENST00000557330 545 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 DUX4L46-201ENST00000566845 751 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC106886.1-201ENST00000568660 600 ntBASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS29Q9UBQ0 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AC138969.2-201ENST00000532739 9932 ntBASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 USP17L6P-201ENST00000382470 1197 ntBASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 HIST2H2BB-201ENST00000449108 381 ntBASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 COX20P2-201ENST00000452636 358 ntBASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 AC132192.2-201ENST00000596206 1147 ntBASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms