Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 SALL4P5-201ENST00000419001 1760 ntBASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AC008267.1-201ENST00000474858 1069 ntBASIC15.81■□□□□ 0.12
VPS52Q8N1B4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.81■□□□□ 0.12
VPS52Q8N1B4 LINC00552-201ENST00000625151 2579 ntBASIC15.81■□□□□ 0.12
VPS52Q8N1B4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS52Q8N1B4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ADAMTS7P1-201ENST00000613213 4793 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 REXO1L2P-201ENST00000425429 2069 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ACE3P-201ENST00000423435 1973 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC019193.1-201ENST00000506678 823 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ALG3P1-201ENST00000508806 1114 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 POU5F1P2-201ENST00000521750 823 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 MIR3147-201ENST00000577811 66 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 MIR4754-201ENST00000582477 89 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC027601.3-201ENST00000622907 509 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 AC023090.2-201ENST00000625182 2110 ntBASIC15.8■□□□□ 0.12
VPS52Q8N1B4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS52Q8N1B4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS52Q8N1B4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms