Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC011467.2-201ENST00000598425 242 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 FERMT2-201ENST00000341590 3338 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RGS3-204ENST00000350696 4387 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ENDOU-201ENST00000229003 2332 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RHBDL3-203ENST00000536287 4470 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 CTAGE10P-201ENST00000318353 2408 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ATP4A-201ENST00000262623 3709 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 DAG1-218ENST00000515359 5576 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 MOB3C-201ENST00000271139 2800 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RTFDC1-202ENST00000357348 2212 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ARHGEF10-203ENST00000398560 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 LRRC57-201ENST00000323443 7351 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PPP6C-202ENST00000415905 4172 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MIGA2-201ENST00000358369 3637 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PTGER3-206ENST00000370924 6982 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 RGS9-203ENST00000449996 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 POM121L7P-201ENST00000329949 2404 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 BDP1-201ENST00000358731 11073 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 FAM184A-211ENST00000521531 3244 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 POM121L6P-201ENST00000441186 1826 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 LPGAT1-202ENST00000366997 7782 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 TIGAR-204ENST00000635110 3633 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SCP2-203ENST00000371514 2811 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 CAMTA2-201ENST00000348066 4491 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 NR4A3-203ENST00000395097 3794 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 RABL2B-201ENST00000354869 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 GUSBP12-201ENST00000513727 720 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HNRNPUP1-201ENST00000554987 333 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 ZNF221-205ENST00000622072 2102 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 AL713866.1-201ENST00000563320 3125 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SLC25A13-202ENST00000416240 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PRKAG2-202ENST00000392801 2281 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SLC44A1-201ENST00000374720 10511 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PITX2-202ENST00000354925 3359 ntAPPRIS ALT1 TSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SCN5A-209ENST00000451551 8343 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 CUL5-201ENST00000393094 6351 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 SEMA3F-206ENST00000434342 3541 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 KIAA0556-201ENST00000261588 6616 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms