Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC12.48□□□□□ -0.41
ABCA4P78363 GCSHP3-201ENST00000431120 391 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 AL512306.1-201ENST00000432698 848 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 AC018463.1-201ENST00000456674 917 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 POLD4-208ENST00000532830 904 ntTSL 3 BASIC12.48□□□□□ -0.41
ABCA4P78363 DNM1P51-201ENST00000558149 522 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 NUDT4P2-201ENST00000578341 546 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 MIR4472-1-201ENST00000584349 80 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 DGAT2L7P-201ENST00000602462 744 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
ABCA4P78363 AP001184.1-201ENST00000637936 376 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 AC013268.4-201ENST00000637413 2228 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.48□□□□□ -0.41
ABCA4P78363 AL118516.1-201ENST00000564152 670 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC12.48□□□□□ -0.41
ABCA4P78363 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 AC005041.3-201ENST00000606287 649 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
ABCA4P78363 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 AC139749.1-202ENST00000617529 3139 ntBASIC12.47□□□□□ -0.41
ABCA4P78363 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 OR8T1P-201ENST00000421347 918 ntBASIC12.47□□□□□ -0.41
ABCA4P78363 FAU-202ENST00000434372 533 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.47□□□□□ -0.41
ABCA4P78363 AC084752.1-201ENST00000509766 622 ntBASIC12.47□□□□□ -0.41
ABCA4P78363 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 AC012158.2-201ENST00000536546 354 ntBASIC12.47□□□□□ -0.41
ABCA4P78363 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
ABCA4P78363 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 AL109954.1-202ENST00000564051 2148 ntBASIC12.47□□□□□ -0.41
ABCA4P78363 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms