Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC020910.6-201ENST00000623084 1459 ntBASIC17.56■□□□□ 0.4
COL5A3P25940 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A3P25940 AC099328.1-201ENST00000498809 1030 ntBASIC17.56■□□□□ 0.4
COL5A3P25940 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A3P25940 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A3P25940 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A3P25940 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A3P25940 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A3P25940 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 RPSAP70-201ENST00000504462 864 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC17.55■□□□□ 0.4
COL5A3P25940 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC17.55■□□□□ 0.4
COL5A3P25940 MIR5091-201ENST00000578707 93 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 CCND3P2-201ENST00000579393 537 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL5A3P25940 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 AC132872.4-202ENST00000622924 2756 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 AL121949.3-201ENST00000406684 385 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 AC098657.1-201ENST00000416270 1135 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A3P25940 METTL7AP1-201ENST00000547343 496 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.55■□□□□ 0.4
COL5A3P25940 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.55■□□□□ 0.4
COL5A3P25940 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC17.55■□□□□ 0.4
COL5A3P25940 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A3P25940 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
COL5A3P25940 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL5A3P25940 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC17.54■□□□□ 0.4
COL5A3P25940 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC17.54■□□□□ 0.4
COL5A3P25940 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC17.54■□□□□ 0.4
COL5A3P25940 RN7SL524P-201ENST00000581152 300 ntBASIC17.54■□□□□ 0.4
COL5A3P25940 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.54■□□□□ 0.4
COL5A3P25940 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.54■□□□□ 0.4
COL5A3P25940 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 AC093462.1-201ENST00000621167 1683 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms