Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.24□□□□□ -0.13
PCNAP12004 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.24□□□□□ -0.13
PCNAP12004 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 AP000593.2-201ENST00000542775 1433 ntBASIC14.24□□□□□ -0.13
PCNAP12004 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
PCNAP12004 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.23□□□□□ -0.13
PCNAP12004 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.23□□□□□ -0.13
PCNAP12004 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.23□□□□□ -0.13
PCNAP12004 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.23□□□□□ -0.13
PCNAP12004 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PCNAP12004 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PCNAP12004 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.22□□□□□ -0.13
PCNAP12004 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
PCNAP12004 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
PCNAP12004 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
PCNAP12004 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.22□□□□□ -0.13
PCNAP12004 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 KRT90P-201ENST00000549264 1064 ntBASIC14.22□□□□□ -0.13
PCNAP12004 AC005225.4-201ENST00000557330 545 ntBASIC14.22□□□□□ -0.13
PCNAP12004 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms