Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 AL109809.1-201ENST00000418979 1367 ntBASIC15.17■□□□□ 0.02
RB1P06400 OR7E115P-201ENST00000382617 1024 ntBASIC15.17■□□□□ 0.02
RB1P06400 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RB1P06400 HLA-DPA2-205ENST00000433582 733 ntBASIC15.17■□□□□ 0.02
RB1P06400 AL161932.2-201ENST00000435436 679 ntBASIC15.17■□□□□ 0.02
RB1P06400 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC15.17■□□□□ 0.02
RB1P06400 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.17■□□□□ 0.02
RB1P06400 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 AL451000.1-201ENST00000451300 1186 ntBASIC15.17■□□□□ 0.02
RB1P06400 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC15.17■□□□□ 0.02
RB1P06400 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC15.17■□□□□ 0.02
RB1P06400 AC106047.2-201ENST00000511723 743 ntBASIC15.17■□□□□ 0.02
RB1P06400 AC005740.1-201ENST00000515639 522 ntBASIC15.17■□□□□ 0.02
RB1P06400 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.17■□□□□ 0.02
RB1P06400 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
RB1P06400 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 VENTXP3-201ENST00000546480 773 ntBASIC15.17■□□□□ 0.02
RB1P06400 SORD2P-201ENST00000558556 1069 ntBASIC15.17■□□□□ 0.02
RB1P06400 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.17■□□□□ 0.02
RB1P06400 AL139339.2-201ENST00000608063 657 ntBASIC15.17■□□□□ 0.02
RB1P06400 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC15.17■□□□□ 0.02
RB1P06400 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 AC126177.1-201ENST00000547829 2218 ntBASIC15.17■□□□□ 0.02
RB1P06400 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RB1P06400 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RB1P06400 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RB1P06400 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RB1P06400 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 AC092384.3-202ENST00000564646 2873 ntBASIC15.16■□□□□ 0.02
RB1P06400 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
RB1P06400 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC15.16■□□□□ 0.02
RB1P06400 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.16■□□□□ 0.02
RB1P06400 ACTBP7-201ENST00000418351 1124 ntBASIC15.16■□□□□ 0.02
RB1P06400 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.16■□□□□ 0.02
RB1P06400 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.16■□□□□ 0.02
RB1P06400 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC15.16■□□□□ 0.02
RB1P06400 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC15.16■□□□□ 0.02
RB1P06400 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.16■□□□□ 0.02
RB1P06400 GDNF-207ENST00000515058 764 ntTSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 KLF17P1-201ENST00000547105 1126 ntBASIC15.16■□□□□ 0.02
RB1P06400 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC15.16■□□□□ 0.02
RB1P06400 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC15.16■□□□□ 0.02
RB1P06400 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC15.16■□□□□ 0.02
RB1P06400 AL009176.1-201ENST00000607876 650 ntBASIC15.16■□□□□ 0.02
RB1P06400 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC15.16■□□□□ 0.02
RB1P06400 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RB1P06400 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms