Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PDGFBP01127 LINC00265-2P-201ENST00000413372 782 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 RN7SL351P-201ENST00000469306 248 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 MBP-230ENST00000528160 584 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 AC004801.1-201ENST00000549557 360 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC14.34□□□□□ -0.11
PDGFBP01127 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC14.34□□□□□ -0.11
PDGFBP01127 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 PSME2-217ENST00000615264 874 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 AC026336.4-201ENST00000624565 1050 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 PSME2-218ENST00000630027 185 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.34□□□□□ -0.11
PDGFBP01127 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.34□□□□□ -0.11
PDGFBP01127 AL050341.2-201ENST00000567508 1541 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 MROH4P-201ENST00000431302 1578 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 C18orf15-201ENST00000623680 2534 ntBASIC14.34□□□□□ -0.11
PDGFBP01127 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDGFBP01127 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC14.33□□□□□ -0.11
PDGFBP01127 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
PDGFBP01127 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.33□□□□□ -0.11
PDGFBP01127 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
PDGFBP01127 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PDGFBP01127 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDGFBP01127 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
PDGFBP01127 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
PDGFBP01127 RPL3P2-204ENST00000413027 1203 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 BX679664.3-201ENST00000414070 555 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 KRT18P62-201ENST00000446618 1287 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 TPT1P6-201ENST00000458298 514 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC14.33□□□□□ -0.12
PDGFBP01127 AC113935.1-201ENST00000471722 555 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PDGFBP01127 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC14.33□□□□□ -0.12
PDGFBP01127 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC14.33□□□□□ -0.12
PDGFBP01127 AC084262.1-201ENST00000567818 751 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 AC016582.2-202ENST00000587765 1094 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.33□□□□□ -0.12
PDGFBP01127 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 CSTP2-201ENST00000610599 398 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 AC005746.3-201ENST00000614751 393 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 AC020922.4-201ENST00000621389 339 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 AC010531.8-201ENST00000623341 685 ntBASIC14.33□□□□□ -0.12
PDGFBP01127 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.33□□□□□ -0.12
PDGFBP01127 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
PDGFBP01127 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.33□□□□□ -0.12
PDGFBP01127 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.33□□□□□ -0.12
PDGFBP01127 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDGFBP01127 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms