Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ATP5G2P3-201ENST00000429083 425 ntBASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 BHLHE23-202ENST00000612929 1109 ntBASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 AC074183.2-201ENST00000623112 922 ntBASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 AF131216.4-201ENST00000638924 1588 ntBASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 KRT18P24-201ENST00000344739 1156 ntBASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA3Q9Y5H8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA3Q9Y5H8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA3Q9Y5H8 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 AL117328.2-201ENST00000624617 1940 ntBASIC23.71■■□□□ 1.39
PCDHA3Q9Y5H8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.7■■□□□ 1.39
PCDHA3Q9Y5H8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
PCDHA3Q9Y5H8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 MIR4281-201ENST00000580852 62 ntBASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 C1orf229-201ENST00000623686 2258 ntBASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 AC233723.2-201ENST00000623798 2106 ntBASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA3Q9Y5H8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDHA3Q9Y5H8 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 THA1P-201ENST00000590384 1145 ntBASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
PCDHA3Q9Y5H8 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 TSPY13P-201ENST00000338964 914 ntBASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 AC010980.1-201ENST00000587192 1142 ntBASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.66■■□□□ 1.38
PCDHA3Q9Y5H8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms