Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 CDCA4P2-201ENST00000441182 718 ntBASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 AC073111.5-205ENST00000641717 521 ntBASIC27.77■■■□□ 2.04
ZC3H4Q9UPT8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
ZC3H4Q9UPT8 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.04
ZC3H4Q9UPT8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 AC097639.1-201ENST00000565519 1891 ntBASIC27.76■■■□□ 2.03
ZC3H4Q9UPT8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
ZC3H4Q9UPT8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
ZC3H4Q9UPT8 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
ZC3H4Q9UPT8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
ZC3H4Q9UPT8 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 pRNA.6-201ENST00000610482 90 ntBASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 pRNA.5-201ENST00000612139 90 ntBASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 pRNA.11-201ENST00000618423 90 ntBASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 pRNA.13-201ENST00000619112 90 ntBASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 AC142086.6-201ENST00000621154 1765 ntBASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
ZC3H4Q9UPT8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
ZC3H4Q9UPT8 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
ZC3H4Q9UPT8 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
ZC3H4Q9UPT8 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 AC066615.1-201ENST00000640911 628 ntBASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
ZC3H4Q9UPT8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 AC026185.1-201ENST00000445748 174 ntBASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC27.71■■■□□ 2.03
ZC3H4Q9UPT8 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
ZC3H4Q9UPT8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
ZC3H4Q9UPT8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC27.7■■■□□ 2.02
ZC3H4Q9UPT8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.7■■■□□ 2.02
ZC3H4Q9UPT8 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.02
ZC3H4Q9UPT8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
ZC3H4Q9UPT8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC27.68■■■□□ 2.02
ZC3H4Q9UPT8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 AL355802.2-201ENST00000402069 882 ntBASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 AC016769.1-201ENST00000409132 1010 ntBASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 NKILA-201ENST00000613231 537 ntTSL 4 BASIC27.67■■■□□ 2.02
ZC3H4Q9UPT8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms