Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIME1Q9H400 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIME1Q9H400 AC097381.1-201ENST00000429019 1296 ntBASIC19.91■□□□□ 0.78
LIME1Q9H400 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.91■□□□□ 0.78
LIME1Q9H400 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIME1Q9H400 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
LIME1Q9H400 SLC6A10P-202ENST00000431994 2058 ntBASIC19.9■□□□□ 0.78
LIME1Q9H400 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIME1Q9H400 AL162430.1-201ENST00000480705 870 ntBASIC19.9■□□□□ 0.78
LIME1Q9H400 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.9■□□□□ 0.78
LIME1Q9H400 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LIME1Q9H400 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIME1Q9H400 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIME1Q9H400 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIME1Q9H400 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIME1Q9H400 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.89■□□□□ 0.77
LIME1Q9H400 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIME1Q9H400 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.89■□□□□ 0.77
LIME1Q9H400 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIME1Q9H400 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIME1Q9H400 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.88■□□□□ 0.77
LIME1Q9H400 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIME1Q9H400 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.87■□□□□ 0.77
LIME1Q9H400 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIME1Q9H400 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIME1Q9H400 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.87■□□□□ 0.77
LIME1Q9H400 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIME1Q9H400 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.87■□□□□ 0.77
LIME1Q9H400 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIME1Q9H400 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.87■□□□□ 0.77
LIME1Q9H400 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIME1Q9H400 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LIME1Q9H400 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIME1Q9H400 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIME1Q9H400 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIME1Q9H400 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.86■□□□□ 0.77
LIME1Q9H400 AC091305.1-201ENST00000479476 895 ntBASIC19.86■□□□□ 0.77
LIME1Q9H400 MIR4767-201ENST00000582827 78 ntBASIC19.86■□□□□ 0.77
LIME1Q9H400 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.86■□□□□ 0.77
LIME1Q9H400 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LIME1Q9H400 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LIME1Q9H400 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 AC004448.1-201ENST00000458332 883 ntBASIC19.85■□□□□ 0.77
LIME1Q9H400 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.85■□□□□ 0.77
LIME1Q9H400 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.85■□□□□ 0.77
LIME1Q9H400 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 AC097639.1-201ENST00000565519 1891 ntBASIC19.85■□□□□ 0.77
LIME1Q9H400 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.85■□□□□ 0.77
LIME1Q9H400 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIME1Q9H400 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 AP003733.4-201ENST00000623785 1697 ntBASIC19.84■□□□□ 0.77
LIME1Q9H400 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LIME1Q9H400 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.84■□□□□ 0.77
LIME1Q9H400 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.84■□□□□ 0.77
LIME1Q9H400 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.84■□□□□ 0.77
LIME1Q9H400 CA15P2-201ENST00000611168 834 ntBASIC19.84■□□□□ 0.77
LIME1Q9H400 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIME1Q9H400 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIME1Q9H400 SYT6-210ENST00000641643 1587 ntBASIC19.83■□□□□ 0.77
LIME1Q9H400 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIME1Q9H400 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.83■□□□□ 0.77
LIME1Q9H400 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
LIME1Q9H400 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.83■□□□□ 0.77
LIME1Q9H400 DUX4L19-201ENST00000557448 1267 ntBASIC19.83■□□□□ 0.77
LIME1Q9H400 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.83■□□□□ 0.77
LIME1Q9H400 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.83■□□□□ 0.77
LIME1Q9H400 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIME1Q9H400 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIME1Q9H400 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIME1Q9H400 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.83■□□□□ 0.76
LIME1Q9H400 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.82■□□□□ 0.76
LIME1Q9H400 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIME1Q9H400 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.82■□□□□ 0.76
LIME1Q9H400 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIME1Q9H400 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIME1Q9H400 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.82■□□□□ 0.76
LIME1Q9H400 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms