Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 AC087393.1-201ENST00000582896 145 ntBASIC19.68■□□□□ 0.74
NKX3-1Q99801 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.68■□□□□ 0.74
NKX3-1Q99801 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX3-1Q99801 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
NKX3-1Q99801 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 AL033527.3-201ENST00000566366 1196 ntBASIC19.67■□□□□ 0.74
NKX3-1Q99801 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.67■□□□□ 0.74
NKX3-1Q99801 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.67■□□□□ 0.74
NKX3-1Q99801 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX3-1Q99801 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NKX3-1Q99801 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX3-1Q99801 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX3-1Q99801 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX3-1Q99801 MIR6765-201ENST00000614092 87 ntBASIC19.66■□□□□ 0.74
NKX3-1Q99801 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX3-1Q99801 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX3-1Q99801 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.66■□□□□ 0.74
NKX3-1Q99801 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX3-1Q99801 KRT18P60-201ENST00000312876 1297 ntBASIC19.65■□□□□ 0.74
NKX3-1Q99801 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX3-1Q99801 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX3-1Q99801 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 DUSP8P3-201ENST00000399571 1760 ntBASIC19.65■□□□□ 0.74
NKX3-1Q99801 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX3-1Q99801 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX3-1Q99801 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NKX3-1Q99801 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
NKX3-1Q99801 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NKX3-1Q99801 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX3-1Q99801 AL592295.1-201ENST00000400984 884 ntBASIC19.64■□□□□ 0.73
NKX3-1Q99801 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX3-1Q99801 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
NKX3-1Q99801 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.64■□□□□ 0.73
NKX3-1Q99801 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX3-1Q99801 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX3-1Q99801 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
NKX3-1Q99801 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NKX3-1Q99801 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX3-1Q99801 LINC00565-201ENST00000562710 2331 ntBASIC19.63■□□□□ 0.73
NKX3-1Q99801 AC092068.2-201ENST00000590491 1708 ntBASIC19.62■□□□□ 0.73
NKX3-1Q99801 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX3-1Q99801 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX3-1Q99801 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NKX3-1Q99801 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX3-1Q99801 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
NKX3-1Q99801 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
NKX3-1Q99801 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.61■□□□□ 0.73
NKX3-1Q99801 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.61■□□□□ 0.73
NKX3-1Q99801 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.61■□□□□ 0.73
NKX3-1Q99801 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms