Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.53■□□□□ 0.72
CMTM3Q96MX0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.52■□□□□ 0.72
CMTM3Q96MX0 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.52■□□□□ 0.71
CMTM3Q96MX0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CMTM3Q96MX0 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.52■□□□□ 0.71
CMTM3Q96MX0 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 AC090877.2-201ENST00000558441 1738 ntBASIC19.51■□□□□ 0.71
CMTM3Q96MX0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CMTM3Q96MX0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 AC060814.1-201ENST00000554326 538 ntBASIC19.5■□□□□ 0.71
CMTM3Q96MX0 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CMTM3Q96MX0 AC092053.2-201ENST00000640557 1818 ntBASIC19.49■□□□□ 0.71
CMTM3Q96MX0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CMTM3Q96MX0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 C11orf96-202ENST00000528572 1834 ntBASIC19.48■□□□□ 0.71
CMTM3Q96MX0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.48■□□□□ 0.71
CMTM3Q96MX0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 AC093536.1-201ENST00000569153 554 ntBASIC19.47■□□□□ 0.71
CMTM3Q96MX0 AC092296.2-201ENST00000589470 999 ntBASIC19.47■□□□□ 0.71
CMTM3Q96MX0 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 CR559946.2-201ENST00000623684 991 ntBASIC19.47■□□□□ 0.71
CMTM3Q96MX0 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CMTM3Q96MX0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.46■□□□□ 0.71
CMTM3Q96MX0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CMTM3Q96MX0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CMTM3Q96MX0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms