Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC140Q96MF4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CCDC140Q96MF4 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 TSPY9P-201ENST00000440215 945 ntBASIC17.58■□□□□ 0.4
CCDC140Q96MF4 TSPY11P-201ENST00000442607 1045 ntBASIC17.58■□□□□ 0.4
CCDC140Q96MF4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 OR2A1-AS1-204ENST00000470435 602 ntBASIC17.58■□□□□ 0.4
CCDC140Q96MF4 MTDHP2-201ENST00000601468 714 ntBASIC17.58■□□□□ 0.4
CCDC140Q96MF4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC140Q96MF4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC140Q96MF4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 HES6-204ENST00000409182 863 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC140Q96MF4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 ANOS2P-203ENST00000472227 1816 ntBASIC17.55■□□□□ 0.4
CCDC140Q96MF4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC140Q96MF4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 AC005703.6-201ENST00000623265 1329 ntBASIC17.54■□□□□ 0.4
CCDC140Q96MF4 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 UNC93B8-201ENST00000511903 705 ntBASIC17.54■□□□□ 0.4
CCDC140Q96MF4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 AC010997.5-201ENST00000609182 354 ntBASIC17.54■□□□□ 0.4
CCDC140Q96MF4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC140Q96MF4 DUSP8P5-201ENST00000422884 1815 ntBASIC17.54■□□□□ 0.4
CCDC140Q96MF4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 GUSBP5-201ENST00000418136 578 ntBASIC17.53■□□□□ 0.4
CCDC140Q96MF4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC140Q96MF4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC140Q96MF4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms