Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 pRNA.5-201ENST00000612139 90 ntBASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 pRNA.11-201ENST00000618423 90 ntBASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 pRNA.13-201ENST00000619112 90 ntBASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMC1BQ8NDV3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMC1BQ8NDV3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC27.3■■□□□ 1.96
SMC1BQ8NDV3 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC1BQ8NDV3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.3■■□□□ 1.96
SMC1BQ8NDV3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMC1BQ8NDV3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.28■■□□□ 1.96
SMC1BQ8NDV3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SMC1BQ8NDV3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 GPX1P1-201ENST00000388829 606 ntBASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMC1BQ8NDV3 ABCB10P1-201ENST00000614297 2181 ntBASIC27.26■■□□□ 1.96
SMC1BQ8NDV3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 KRT18P61-201ENST00000585825 1298 ntBASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC27.26■■□□□ 1.95
SMC1BQ8NDV3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC1BQ8NDV3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC27.24■■□□□ 1.95
SMC1BQ8NDV3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.24■■□□□ 1.95
SMC1BQ8NDV3 KRT18P6-201ENST00000555540 1265 ntBASIC27.24■■□□□ 1.95
SMC1BQ8NDV3 LINC01003-201ENST00000564834 1764 ntBASIC27.24■■□□□ 1.95
SMC1BQ8NDV3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC27.24■■□□□ 1.95
SMC1BQ8NDV3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 AC142086.2-201ENST00000569753 217 ntBASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMC1BQ8NDV3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 AP005435.1-201ENST00000529293 1178 ntBASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMC1BQ8NDV3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
SMC1BQ8NDV3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC27.2■■□□□ 1.95
SMC1BQ8NDV3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.2■■□□□ 1.95
SMC1BQ8NDV3 MIR663A-201ENST00000385250 93 ntBASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 AC131274.2-201ENST00000580697 1507 ntBASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
SMC1BQ8NDV3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 FAM201B-201ENST00000458407 597 ntBASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMC1BQ8NDV3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms