Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
CCDC116Q8IYX3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 MIR4787-201ENST00000607364 84 ntBASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC116Q8IYX3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 AC092028.1-203ENST00000608262 953 ntBASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CCDC116Q8IYX3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC116Q8IYX3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CCDC116Q8IYX3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.33■■□□□ 1.01
CCDC116Q8IYX3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC116Q8IYX3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.33■■□□□ 1
CCDC116Q8IYX3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.32■■□□□ 1
CCDC116Q8IYX3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.32■■□□□ 1
CCDC116Q8IYX3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.32■■□□□ 1
CCDC116Q8IYX3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC116Q8IYX3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.31■■□□□ 1
CCDC116Q8IYX3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CCDC116Q8IYX3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 ANOS2P-203ENST00000472227 1816 ntBASIC21.31■■□□□ 1
CCDC116Q8IYX3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC116Q8IYX3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.3■■□□□ 1
CCDC116Q8IYX3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.3■■□□□ 1
CCDC116Q8IYX3 DUSP8P5-201ENST00000422884 1815 ntBASIC21.3■■□□□ 1
CCDC116Q8IYX3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.3■■□□□ 1
CCDC116Q8IYX3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC116Q8IYX3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.29■■□□□ 1
CCDC116Q8IYX3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.29■■□□□ 1
CCDC116Q8IYX3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
CCDC116Q8IYX3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 MIR6722-201ENST00000617286 78 ntBASIC21.29■■□□□ 1
CCDC116Q8IYX3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.29■■□□□ 1
CCDC116Q8IYX3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC116Q8IYX3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.29■■□□□ 1
CCDC116Q8IYX3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC116Q8IYX3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC116Q8IYX3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC116Q8IYX3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC116Q8IYX3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CCDC116Q8IYX3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC116Q8IYX3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC116Q8IYX3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC116Q8IYX3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms