Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.75■■■□□ 2.03
USP48Q86UV5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC27.75■■■□□ 2.03
USP48Q86UV5 RARRES2P11-201ENST00000635158 484 ntBASIC27.75■■■□□ 2.03
USP48Q86UV5 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
USP48Q86UV5 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP48Q86UV5 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC27.74■■■□□ 2.03
USP48Q86UV5 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.73■■■□□ 2.03
USP48Q86UV5 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.73■■■□□ 2.03
USP48Q86UV5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC27.73■■■□□ 2.03
USP48Q86UV5 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC27.73■■■□□ 2.03
USP48Q86UV5 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 AC092171.4-201ENST00000609130 632 ntBASIC27.73■■■□□ 2.03
USP48Q86UV5 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP48Q86UV5 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC27.72■■■□□ 2.03
USP48Q86UV5 AC005703.6-201ENST00000623265 1329 ntBASIC27.72■■■□□ 2.03
USP48Q86UV5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.72■■■□□ 2.03
USP48Q86UV5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.72■■■□□ 2.03
USP48Q86UV5 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.72■■■□□ 2.03
USP48Q86UV5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USP48Q86UV5 AC027682.1-201ENST00000562846 899 ntBASIC27.72■■■□□ 2.03
USP48Q86UV5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC27.72■■■□□ 2.03
USP48Q86UV5 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USP48Q86UV5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.71■■■□□ 2.03
USP48Q86UV5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC27.71■■■□□ 2.03
USP48Q86UV5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.71■■■□□ 2.03
USP48Q86UV5 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.71■■■□□ 2.03
USP48Q86UV5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC27.71■■■□□ 2.03
USP48Q86UV5 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
USP48Q86UV5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
USP48Q86UV5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC27.7■■■□□ 2.02
USP48Q86UV5 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
USP48Q86UV5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC27.7■■■□□ 2.02
USP48Q86UV5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
USP48Q86UV5 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC27.7■■■□□ 2.02
USP48Q86UV5 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
USP48Q86UV5 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
USP48Q86UV5 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP48Q86UV5 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.69■■■□□ 2.02
USP48Q86UV5 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP48Q86UV5 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP48Q86UV5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC27.69■■■□□ 2.02
USP48Q86UV5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC27.69■■■□□ 2.02
USP48Q86UV5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC27.69■■■□□ 2.02
USP48Q86UV5 IKBKGP1-201ENST00000612193 1073 ntBASIC27.69■■■□□ 2.02
USP48Q86UV5 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
USP48Q86UV5 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP48Q86UV5 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC27.69■■■□□ 2.02
USP48Q86UV5 AC099791.1-201ENST00000416440 715 ntBASIC27.68■■■□□ 2.02
USP48Q86UV5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC27.68■■■□□ 2.02
USP48Q86UV5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USP48Q86UV5 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.68■■■□□ 2.02
USP48Q86UV5 AC099791.2-201ENST00000605725 427 ntBASIC27.68■■■□□ 2.02
USP48Q86UV5 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USP48Q86UV5 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.68■■■□□ 2.02
USP48Q86UV5 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
USP48Q86UV5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 PTCHD3P2-201ENST00000424937 1205 ntBASIC27.67■■■□□ 2.02
USP48Q86UV5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC27.67■■■□□ 2.02
USP48Q86UV5 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC27.67■■■□□ 2.02
USP48Q86UV5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC27.67■■■□□ 2.02
USP48Q86UV5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC27.67■■■□□ 2.02
USP48Q86UV5 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.67■■■□□ 2.02
USP48Q86UV5 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USP48Q86UV5 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC27.66■■■□□ 2.02
USP48Q86UV5 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP48Q86UV5 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP48Q86UV5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC27.66■■■□□ 2.02
USP48Q86UV5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC27.66■■■□□ 2.02
USP48Q86UV5 RARA-203ENST00000394086 2008 ntTSL 2 BASIC27.66■■■□□ 2.02
USP48Q86UV5 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27.66■■■□□ 2.02
USP48Q86UV5 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP48Q86UV5 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USP48Q86UV5 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USP48Q86UV5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
USP48Q86UV5 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
USP48Q86UV5 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USP48Q86UV5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC27.65■■■□□ 2.02
USP48Q86UV5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
USP48Q86UV5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.65■■■□□ 2.02
USP48Q86UV5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC27.65■■■□□ 2.02
USP48Q86UV5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC27.65■■■□□ 2.02
USP48Q86UV5 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
USP48Q86UV5 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
USP48Q86UV5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC27.64■■■□□ 2.02
USP48Q86UV5 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms