Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.14■■■□□ 2.1
COL4A1P02462 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.14■■■□□ 2.1
COL4A1P02462 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL4A1P02462 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.14■■■□□ 2.09
COL4A1P02462 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.13■■■□□ 2.09
COL4A1P02462 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.13■■■□□ 2.09
COL4A1P02462 AC097381.1-201ENST00000429019 1296 ntBASIC28.13■■■□□ 2.09
COL4A1P02462 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC28.13■■■□□ 2.09
COL4A1P02462 MIR3181-201ENST00000578512 73 ntBASIC28.13■■■□□ 2.09
COL4A1P02462 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A1P02462 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.13■■■□□ 2.09
COL4A1P02462 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
COL4A1P02462 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC28.13■■■□□ 2.09
COL4A1P02462 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.13■■■□□ 2.09
COL4A1P02462 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.13■■■□□ 2.09
COL4A1P02462 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.13■■■□□ 2.09
COL4A1P02462 AC104564.3-201ENST00000582367 638 ntBASIC28.13■■■□□ 2.09
COL4A1P02462 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.13■■■□□ 2.09
COL4A1P02462 AC009086.3-201ENST00000623486 1008 ntBASIC28.13■■■□□ 2.09
COL4A1P02462 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL4A1P02462 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
COL4A1P02462 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.12■■■□□ 2.09
COL4A1P02462 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.12■■■□□ 2.09
COL4A1P02462 MIR5787-201ENST00000611784 55 ntBASIC28.12■■■□□ 2.09
COL4A1P02462 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC28.11■■■□□ 2.09
COL4A1P02462 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A1P02462 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A1P02462 AC022211.4-201ENST00000625094 2161 ntBASIC28.11■■■□□ 2.09
COL4A1P02462 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A1P02462 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A1P02462 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
COL4A1P02462 AC135731.1-201ENST00000569415 2548 ntBASIC28.1■■■□□ 2.09
COL4A1P02462 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
COL4A1P02462 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A1P02462 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A1P02462 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.1■■■□□ 2.09
COL4A1P02462 AL031602.1-201ENST00000633169 911 ntBASIC28.1■■■□□ 2.09
COL4A1P02462 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A1P02462 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC28.1■■■□□ 2.09
COL4A1P02462 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A1P02462 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A1P02462 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.1■■■□□ 2.09
COL4A1P02462 SLC47A1P1-202ENST00000449666 945 ntBASIC28.1■■■□□ 2.09
COL4A1P02462 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.1■■■□□ 2.09
COL4A1P02462 AC092171.4-201ENST00000609130 632 ntBASIC28.1■■■□□ 2.09
COL4A1P02462 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
COL4A1P02462 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
COL4A1P02462 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.09■■■□□ 2.09
COL4A1P02462 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.09■■■□□ 2.09
COL4A1P02462 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A1P02462 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC28.08■■■□□ 2.09
COL4A1P02462 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A1P02462 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.07■■■□□ 2.08
COL4A1P02462 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A1P02462 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A1P02462 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC28.07■■■□□ 2.08
COL4A1P02462 AC241377.3-202ENST00000626088 1088 ntBASIC28.07■■■□□ 2.08
COL4A1P02462 AC241585.3-202ENST00000628937 1088 ntBASIC28.07■■■□□ 2.08
COL4A1P02462 AC245100.8-202ENST00000629247 1058 ntBASIC28.07■■■□□ 2.08
COL4A1P02462 ALDH1A3-203ENST00000557963 1670 ntBASIC28.07■■■□□ 2.08
COL4A1P02462 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A1P02462 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A1P02462 AL162430.1-201ENST00000480705 870 ntBASIC28.07■■■□□ 2.08
COL4A1P02462 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC28.07■■■□□ 2.08
COL4A1P02462 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.06■■■□□ 2.08
COL4A1P02462 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL4A1P02462 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL4A1P02462 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.06■■■□□ 2.08
COL4A1P02462 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.06■■■□□ 2.08
COL4A1P02462 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.06■■■□□ 2.08
COL4A1P02462 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC28.06■■■□□ 2.08
COL4A1P02462 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.06■■■□□ 2.08
COL4A1P02462 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.05■■■□□ 2.08
COL4A1P02462 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A1P02462 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A1P02462 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A1P02462 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A1P02462 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A1P02462 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A1P02462 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC28.04■■■□□ 2.08
COL4A1P02462 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.03■■■□□ 2.08
COL4A1P02462 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms