Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
LDLRP01130 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.75■■□□□ 1.07
LDLRP01130 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.75■■□□□ 1.07
LDLRP01130 LONRF2P2-201ENST00000439212 571 ntBASIC21.75■■□□□ 1.07
LDLRP01130 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.75■■□□□ 1.07
LDLRP01130 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
LDLRP01130 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LDLRP01130 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.74■■□□□ 1.07
LDLRP01130 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LDLRP01130 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.74■■□□□ 1.07
LDLRP01130 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.74■■□□□ 1.07
LDLRP01130 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LDLRP01130 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.74■■□□□ 1.07
LDLRP01130 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 HLA-L-211ENST00000482052 1765 ntBASIC21.74■■□□□ 1.07
LDLRP01130 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDLRP01130 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 UNC93B8-201ENST00000511903 705 ntBASIC21.73■■□□□ 1.07
LDLRP01130 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LDLRP01130 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDLRP01130 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
LDLRP01130 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.72■■□□□ 1.07
LDLRP01130 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.72■■□□□ 1.07
LDLRP01130 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDLRP01130 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDLRP01130 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDLRP01130 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LDLRP01130 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LDLRP01130 BX664725.1-201ENST00000438252 379 ntBASIC21.72■■□□□ 1.07
LDLRP01130 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
LDLRP01130 AL139246.5-201ENST00000606645 996 ntBASIC21.72■■□□□ 1.07
LDLRP01130 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDLRP01130 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
LDLRP01130 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LDLRP01130 KRT16P3-201ENST00000439127 1283 ntBASIC21.71■■□□□ 1.07
LDLRP01130 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.71■■□□□ 1.07
LDLRP01130 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDLRP01130 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDLRP01130 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDLRP01130 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDLRP01130 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.71■■□□□ 1.07
LDLRP01130 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.71■■□□□ 1.07
LDLRP01130 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDLRP01130 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDLRP01130 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDLRP01130 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LDLRP01130 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.7■■□□□ 1.06
LDLRP01130 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.7■■□□□ 1.06
LDLRP01130 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.7■■□□□ 1.06
LDLRP01130 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.7■■□□□ 1.06
LDLRP01130 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.7■■□□□ 1.06
LDLRP01130 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.69■■□□□ 1.06
LDLRP01130 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDLRP01130 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LDLRP01130 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LDLRP01130 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.69■■□□□ 1.06
LDLRP01130 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.69■■□□□ 1.06
LDLRP01130 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
LDLRP01130 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDLRP01130 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LDLRP01130 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LDLRP01130 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 RPS2P7-201ENST00000447334 885 ntBASIC21.68■■□□□ 1.06
LDLRP01130 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LDLRP01130 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LDLRP01130 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LDLRP01130 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LDLRP01130 AC233723.2-201ENST00000623798 2106 ntBASIC21.67■■□□□ 1.06
LDLRP01130 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LDLRP01130 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LDLRP01130 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.67■■□□□ 1.06
LDLRP01130 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDLRP01130 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDLRP01130 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms