Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.9■■□□□ 1.42
RTN3O95197 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
RTN3O95197 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
RTN3O95197 AL139246.5-201ENST00000606645 996 ntBASIC23.89■■□□□ 1.41
RTN3O95197 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RTN3O95197 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RTN3O95197 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RTN3O95197 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RTN3O95197 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.88■■□□□ 1.41
RTN3O95197 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RTN3O95197 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.88■■□□□ 1.41
RTN3O95197 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RTN3O95197 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.88■■□□□ 1.41
RTN3O95197 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.88■■□□□ 1.41
RTN3O95197 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RTN3O95197 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RTN3O95197 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RTN3O95197 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.88■■□□□ 1.41
RTN3O95197 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.87■■□□□ 1.41
RTN3O95197 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
RTN3O95197 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.87■■□□□ 1.41
RTN3O95197 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.87■■□□□ 1.41
RTN3O95197 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.87■■□□□ 1.41
RTN3O95197 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
RTN3O95197 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RTN3O95197 AC009102.2-201ENST00000606772 1639 ntBASIC23.87■■□□□ 1.41
RTN3O95197 AC141586.4-201ENST00000624558 1573 ntBASIC23.86■■□□□ 1.41
RTN3O95197 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RTN3O95197 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RTN3O95197 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
RTN3O95197 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RTN3O95197 AC096631.2-201ENST00000436136 790 ntBASIC23.86■■□□□ 1.41
RTN3O95197 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.86■■□□□ 1.41
RTN3O95197 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.86■■□□□ 1.41
RTN3O95197 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
RTN3O95197 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RTN3O95197 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.85■■□□□ 1.41
RTN3O95197 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.85■■□□□ 1.41
RTN3O95197 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RTN3O95197 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.85■■□□□ 1.41
RTN3O95197 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.85■■□□□ 1.41
RTN3O95197 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.85■■□□□ 1.41
RTN3O95197 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.85■■□□□ 1.41
RTN3O95197 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RTN3O95197 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.84■■□□□ 1.41
RTN3O95197 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
RTN3O95197 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RTN3O95197 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.84■■□□□ 1.41
RTN3O95197 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RTN3O95197 AC110285.6-201ENST00000617652 491 ntBASIC23.84■■□□□ 1.41
RTN3O95197 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RTN3O95197 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.84■■□□□ 1.41
RTN3O95197 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.83■■□□□ 1.41
RTN3O95197 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
RTN3O95197 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
RTN3O95197 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.83■■□□□ 1.41
RTN3O95197 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
RTN3O95197 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RTN3O95197 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
RTN3O95197 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
RTN3O95197 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
RTN3O95197 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 AC092171.4-201ENST00000609130 632 ntBASIC23.82■■□□□ 1.4
RTN3O95197 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
RTN3O95197 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.82■■□□□ 1.4
RTN3O95197 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTN3O95197 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.81■■□□□ 1.4
RTN3O95197 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RTN3O95197 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RTN3O95197 DUX4L19-201ENST00000557448 1267 ntBASIC23.81■■□□□ 1.4
RTN3O95197 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.81■■□□□ 1.4
RTN3O95197 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTN3O95197 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.81■■□□□ 1.4
RTN3O95197 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTN3O95197 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms