Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
SEMA3DO95025 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.67■■□□□ 1.06
SEMA3DO95025 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.67■■□□□ 1.06
SEMA3DO95025 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.67■■□□□ 1.06
SEMA3DO95025 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.67■■□□□ 1.06
SEMA3DO95025 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.67■■□□□ 1.06
SEMA3DO95025 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SEMA3DO95025 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.67■■□□□ 1.06
SEMA3DO95025 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEMA3DO95025 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SEMA3DO95025 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.66■■□□□ 1.06
SEMA3DO95025 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SEMA3DO95025 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEMA3DO95025 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEMA3DO95025 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SEMA3DO95025 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEMA3DO95025 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SEMA3DO95025 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.66■■□□□ 1.06
SEMA3DO95025 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.66■■□□□ 1.06
SEMA3DO95025 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.65■■□□□ 1.06
SEMA3DO95025 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 DUSP8P5-201ENST00000422884 1815 ntBASIC21.65■■□□□ 1.06
SEMA3DO95025 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SEMA3DO95025 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEMA3DO95025 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SEMA3DO95025 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SEMA3DO95025 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SEMA3DO95025 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SEMA3DO95025 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.64■■□□□ 1.05
SEMA3DO95025 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SEMA3DO95025 MIR6722-201ENST00000617286 78 ntBASIC21.64■■□□□ 1.05
SEMA3DO95025 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SEMA3DO95025 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SEMA3DO95025 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.63■■□□□ 1.05
SEMA3DO95025 KRT125P-201ENST00000546827 989 ntBASIC21.63■■□□□ 1.05
SEMA3DO95025 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.63■■□□□ 1.05
SEMA3DO95025 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SEMA3DO95025 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.63■■□□□ 1.05
SEMA3DO95025 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SEMA3DO95025 AC092068.2-201ENST00000590491 1708 ntBASIC21.63■■□□□ 1.05
SEMA3DO95025 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SEMA3DO95025 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SEMA3DO95025 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.62■■□□□ 1.05
SEMA3DO95025 ANOS2P-203ENST00000472227 1816 ntBASIC21.62■■□□□ 1.05
SEMA3DO95025 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.62■■□□□ 1.05
SEMA3DO95025 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.62■■□□□ 1.05
SEMA3DO95025 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.62■■□□□ 1.05
SEMA3DO95025 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.62■■□□□ 1.05
SEMA3DO95025 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEMA3DO95025 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.62■■□□□ 1.05
SEMA3DO95025 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.62■■□□□ 1.05
SEMA3DO95025 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SEMA3DO95025 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
SEMA3DO95025 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.61■■□□□ 1.05
SEMA3DO95025 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.61■■□□□ 1.05
SEMA3DO95025 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.61■■□□□ 1.05
SEMA3DO95025 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SEMA3DO95025 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SEMA3DO95025 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SEMA3DO95025 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.61■■□□□ 1.05
SEMA3DO95025 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SEMA3DO95025 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.6■■□□□ 1.05
SEMA3DO95025 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SEMA3DO95025 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SEMA3DO95025 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.6■■□□□ 1.05
SEMA3DO95025 AC009299.2-201ENST00000482477 511 ntBASIC21.6■■□□□ 1.05
SEMA3DO95025 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms