Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM13O60858 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM13O60858 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM13O60858 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
TRIM13O60858 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
TRIM13O60858 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.31■■□□□ 1.16
TRIM13O60858 ALDH1A3-203ENST00000557963 1670 ntBASIC22.31■■□□□ 1.16
TRIM13O60858 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.31■■□□□ 1.16
TRIM13O60858 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.31■■□□□ 1.16
TRIM13O60858 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
TRIM13O60858 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.31■■□□□ 1.16
TRIM13O60858 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM13O60858 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
TRIM13O60858 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM13O60858 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
TRIM13O60858 AC131274.2-201ENST00000580697 1507 ntBASIC22.3■■□□□ 1.16
TRIM13O60858 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
TRIM13O60858 CLDN5-201ENST00000403084 2357 ntBASIC22.3■■□□□ 1.16
TRIM13O60858 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.29■■□□□ 1.16
TRIM13O60858 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 AC011551.1-201ENST00000614101 683 ntBASIC22.29■■□□□ 1.16
TRIM13O60858 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM13O60858 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM13O60858 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
TRIM13O60858 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM13O60858 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM13O60858 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM13O60858 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM13O60858 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM13O60858 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
TRIM13O60858 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM13O60858 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.27■■□□□ 1.16
TRIM13O60858 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM13O60858 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
TRIM13O60858 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.27■■□□□ 1.16
TRIM13O60858 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM13O60858 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM13O60858 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.27■■□□□ 1.16
TRIM13O60858 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
TRIM13O60858 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.27■■□□□ 1.16
TRIM13O60858 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
TRIM13O60858 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
TRIM13O60858 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
TRIM13O60858 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.27■■□□□ 1.16
TRIM13O60858 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM13O60858 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
TRIM13O60858 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM13O60858 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM13O60858 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.26■■□□□ 1.15
TRIM13O60858 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
TRIM13O60858 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM13O60858 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM13O60858 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM13O60858 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM13O60858 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRIM13O60858 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM13O60858 GUSBP5-202ENST00000510805 1989 ntBASIC22.25■■□□□ 1.15
TRIM13O60858 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM13O60858 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.25■■□□□ 1.15
TRIM13O60858 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM13O60858 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.25■■□□□ 1.15
TRIM13O60858 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.24■■□□□ 1.15
TRIM13O60858 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM13O60858 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
TRIM13O60858 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM13O60858 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.23■■□□□ 1.15
TRIM13O60858 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.23■■□□□ 1.15
TRIM13O60858 LINC00565-201ENST00000562710 2331 ntBASIC22.23■■□□□ 1.15
TRIM13O60858 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM13O60858 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM13O60858 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM13O60858 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.22■■□□□ 1.15
TRIM13O60858 LINC00526-201ENST00000581067 1875 ntBASIC22.22■■□□□ 1.15
TRIM13O60858 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM13O60858 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM13O60858 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.22■■□□□ 1.15
TRIM13O60858 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.22■■□□□ 1.15
TRIM13O60858 AC129492.7-201ENST00000622992 756 ntBASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms