Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.45■■■□□ 2.47
SENP3-EIF4A1A0A087X0R7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 KRT16P3-201ENST00000439127 1283 ntBASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 AC135279.3-201ENST00000610945 1311 ntBASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.41■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 AL136116.3-201ENST00000402907 1138 ntBASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
SENP3-EIF4A1A0A087X0R7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC30.39■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC30.37■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AC131281.2-201ENST00000520478 145 ntBASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC30.35■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.35■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC30.34■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.34■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms