Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ARSEP1-201ENST00000420443 635 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CNN2P8-201ENST00000421872 913 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 FAM197Y7-201ENST00000432892 766 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 FAM8A4P-201ENST00000435433 1213 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 GAPDHP21-201ENST00000450301 1010 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ALG3P1-201ENST00000508806 1114 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AC106886.1-201ENST00000568660 600 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AC006453.4-201ENST00000636949 1252 ntBASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DRB4X5D2U9 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 AGGF1P1-201ENST00000509500 2073 ntBASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DRB4X5D2U9 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 RN7SKP175-201ENST00000408472 289 ntBASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 AC234783.1-201ENST00000441761 496 ntBASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DRB4X5D2U9 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms