Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 INE1-201ENST00000456273 945 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 MESTP3-201ENST00000503460 968 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC131206.1-201ENST00000538078 1211 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AL596325.1-201ENST00000563991 1082 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC138696.2-201ENST00000607376 223 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC138466.3-201ENST00000619983 221 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC011498.7-201ENST00000624986 2027 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TPM3P8-201ENST00000330554 643 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 AP005018.1-201ENST00000525475 301 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SLC25A47P1-201ENST00000531577 414 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MIR6074-201ENST00000612054 107 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FKBP4P6-201ENST00000457486 1332 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MRPL37P1-201ENST00000592451 1337 ntBASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms