Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC005252.3-201ENST00000623855 2258 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC004945.1-201ENST00000416738 983 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.03■□□□□ -0
PCDH9Q9HC56 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.03■□□□□ -0
PCDH9Q9HC56 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.03■□□□□ -0
PCDH9Q9HC56 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC023310.1-201ENST00000554836 735 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.03■□□□□ -0
PCDH9Q9HC56 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC073413.1-201ENST00000603927 732 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC133552.6-201ENST00000613406 534 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 MIR6805-201ENST00000615055 62 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 AC008687.7-202ENST00000637404 953 ntBASIC15.03■□□□□ -0
PCDH9Q9HC56 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.03■□□□□ -0
PCDH9Q9HC56 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
PCDH9Q9HC56 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDH9Q9HC56 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.03■□□□□ -0
PCDH9Q9HC56 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.02■□□□□ -0
PCDH9Q9HC56 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 AC009093.10-201ENST00000641956 1442 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.02■□□□□ -0
PCDH9Q9HC56 GK-202ENST00000378941 458 ntTSL 3 BASIC15.02■□□□□ -0
PCDH9Q9HC56 MIR658-201ENST00000385210 100 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.02■□□□□ -0
PCDH9Q9HC56 AL161932.2-201ENST00000435436 679 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 ATP5G2P4-201ENST00000442175 420 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.02■□□□□ -0
PCDH9Q9HC56 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
PCDH9Q9HC56 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.02■□□□□ -0
PCDH9Q9HC56 AC119751.2-201ENST00000504529 210 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.02■□□□□ -0
PCDH9Q9HC56 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.02■□□□□ -0
PCDH9Q9HC56 COX11-210ENST00000639671 696 ntBASIC15.02■□□□□ -0
PCDH9Q9HC56 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 AL137784.3-201ENST00000623858 2288 ntBASIC15.02□□□□□ -0.01
PCDH9Q9HC56 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 CICP17-201ENST00000418553 2377 ntBASIC15.02□□□□□ -0.01
PCDH9Q9HC56 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
PCDH9Q9HC56 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms