Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CYTH2-213ENST00000620214 2020 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 ZNF169-204ENST00000481550 1696 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 INTS6L-206ENST00000639893 3904 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 MME-204ENST00000462745 3590 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 MVP-201ENST00000357402 2870 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 SLC36A4-201ENST00000326402 6012 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 BCL2L11-218ENST00000615946 5026 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 BCL2L11-220ENST00000620862 5044 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 OVOL1-201ENST00000335987 3034 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 PLA2G6-203ENST00000402064 3011 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 AC018645.3-201ENST00000628855 2646 ntBASIC8.96□□□□□ -0.98
LINC00643Q86TS7 OACYLP-201ENST00000417918 2208 ntBASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CRBN-215ENST00000639284 2223 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 ATP8B2-202ENST00000368489 5861 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 ETNK1-201ENST00000266517 7159 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 API5-203ENST00000455725 2257 ntTSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 DCLRE1C-210ENST00000378289 3532 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PLEKHH1-201ENST00000329153 6604 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TRIOBP-204ENST00000406386 10129 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PRKAG1-205ENST00000547306 1531 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SPIN3-201ENST00000374919 4642 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC009108.4-201ENST00000623284 2451 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 APC2-203ENST00000535453 11656 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PBOV1-201ENST00000527246 2506 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 CDC42BPA-202ENST00000366764 10445 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TUFT1-202ENST00000368848 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 IGSF9-201ENST00000361509 3996 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SPOCK3-203ENST00000421836 3061 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 DGKZ-220ENST00000532868 3118 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 NPNT-202ENST00000379987 4598 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SP7-202ENST00000536324 3151 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 A1CF-203ENST00000373995 2211 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 APEH-201ENST00000296456 3220 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SARDH-207ENST00000439388 3216 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SLC18A1-201ENST00000265808 2770 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 SLC29A4P1-201ENST00000398760 971 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PMS2P2-201ENST00000425039 1128 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AK2P2-201ENST00000439142 405 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RASA4DP-201ENST00000460726 1199 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC107918.2-201ENST00000530817 355 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC8.95□□□□□ -0.98
LINC00643Q86TS7 AC233263.1-201ENST00000578059 224 ntBASIC8.95□□□□□ -0.98
LINC00643Q86TS7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms