Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 ANKRD19P-201ENST00000338192 862 ntBASIC14.04□□□□□ -0.16
PCDH1Q08174 MIR1909-201ENST00000411312 80 ntBASIC14.04□□□□□ -0.16
PCDH1Q08174 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 RAB43P1-201ENST00000561790 589 ntBASIC14.04□□□□□ -0.16
PCDH1Q08174 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 MIR6720-201ENST00000611664 98 ntBASIC14.04□□□□□ -0.16
PCDH1Q08174 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 MST1P2-201ENST00000457982 2291 ntBASIC14.04□□□□□ -0.16
PCDH1Q08174 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PCDH1Q08174 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
PCDH1Q08174 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.04□□□□□ -0.16
PCDH1Q08174 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PCDH1Q08174 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 AL359183.1-201ENST00000623796 2132 ntBASIC14.03□□□□□ -0.16
PCDH1Q08174 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 AC234783.1-201ENST00000441761 496 ntBASIC14.03□□□□□ -0.16
PCDH1Q08174 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
PCDH1Q08174 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 AP006547.1-201ENST00000563435 692 ntBASIC14.03□□□□□ -0.16
PCDH1Q08174 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.03□□□□□ -0.16
PCDH1Q08174 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.03□□□□□ -0.16
PCDH1Q08174 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 Z98259.2-201ENST00000641583 609 ntBASIC14.03□□□□□ -0.16
PCDH1Q08174 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 E2F3P2-201ENST00000447755 1422 ntBASIC14.03□□□□□ -0.16
PCDH1Q08174 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PCDH1Q08174 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
PCDH1Q08174 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 279.2 ms