Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SCN1BQ07699 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SCN1BQ07699 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SCN1BQ07699 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SCN1BQ07699 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
SCN1BQ07699 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 REXO1L1P-201ENST00000379010 6598 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.04□□□□□ -0.32
SCN1BQ07699 METTL21AP1-201ENST00000438852 635 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 RPL13P2-201ENST00000440687 659 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC087499.5-201ENST00000452760 1342 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.04□□□□□ -0.32
SCN1BQ07699 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.04□□□□□ -0.32
SCN1BQ07699 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 AC100757.3-201ENST00000622361 1406 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.04□□□□□ -0.32
SCN1BQ07699 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SCN1BQ07699 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.04□□□□□ -0.32
SCN1BQ07699 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SCN1BQ07699 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.03□□□□□ -0.32
SCN1BQ07699 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.03□□□□□ -0.32
SCN1BQ07699 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
SCN1BQ07699 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 DLX4-206ENST00000611342 1662 ntBASIC13.03□□□□□ -0.32
SCN1BQ07699 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
SCN1BQ07699 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.03□□□□□ -0.32
SCN1BQ07699 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SCN1BQ07699 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.03□□□□□ -0.32
SCN1BQ07699 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.03□□□□□ -0.32
SCN1BQ07699 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
SCN1BQ07699 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.03□□□□□ -0.32
SCN1BQ07699 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SCN1BQ07699 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.03□□□□□ -0.32
SCN1BQ07699 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.03□□□□□ -0.32
SCN1BQ07699 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms