Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 AP002414.2-201ENST00000591780 3365 ntBASIC11.81□□□□□ -0.52
LMO4P61968 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC11.81□□□□□ -0.52
LMO4P61968 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 NFIC-211ENST00000641145 8399 ntBASIC11.8□□□□□ -0.52
LMO4P61968 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 SAT1-201ENST00000379251 801 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 SAT1-202ENST00000379253 909 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 SAT1-203ENST00000379254 868 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC11.8□□□□□ -0.52
LMO4P61968 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
LMO4P61968 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 BUD31-205ENST00000456893 512 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
LMO4P61968 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 AL512310.5-201ENST00000551999 515 ntBASIC11.8□□□□□ -0.52
LMO4P61968 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 RN7SL470P-201ENST00000583069 259 ntBASIC11.8□□□□□ -0.52
LMO4P61968 MIR2392-201ENST00000584881 84 ntBASIC11.8□□□□□ -0.52
LMO4P61968 GMFG-209ENST00000600322 622 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 AC090505.1-201ENST00000430515 1834 ntBASIC11.8□□□□□ -0.52
LMO4P61968 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 TPO-203ENST00000346956 2923 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 AC007952.5-201ENST00000572818 1486 ntBASIC11.8□□□□□ -0.52
LMO4P61968 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
LMO4P61968 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC11.8□□□□□ -0.52
LMO4P61968 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC11.8□□□□□ -0.52
LMO4P61968 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LMO4P61968 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
LMO4P61968 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC11.79□□□□□ -0.52
LMO4P61968 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LMO4P61968 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms