Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 AC134312.5-201ENST00000568031 1313 ntBASIC15.42■□□□□ 0.06
LIG3P49916 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 TP73-211ENST00000604074 4806 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
LIG3P49916 ACKR1-201ENST00000368121 1240 ntBASIC15.41■□□□□ 0.06
LIG3P49916 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.41■□□□□ 0.06
LIG3P49916 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 RPL5P21-201ENST00000404620 815 ntBASIC15.41■□□□□ 0.06
LIG3P49916 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.41■□□□□ 0.06
LIG3P49916 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.41■□□□□ 0.06
LIG3P49916 ATP5G2P4-201ENST00000442175 420 ntBASIC15.41■□□□□ 0.06
LIG3P49916 BCRP2-202ENST00000447763 634 ntBASIC15.41■□□□□ 0.06
LIG3P49916 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.41■□□□□ 0.06
LIG3P49916 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.41■□□□□ 0.06
LIG3P49916 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 BCRP6-201ENST00000510112 632 ntBASIC15.41■□□□□ 0.06
LIG3P49916 BCRP7-201ENST00000511549 544 ntBASIC15.41■□□□□ 0.06
LIG3P49916 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.41■□□□□ 0.06
LIG3P49916 AP001889.1-201ENST00000525414 633 ntBASIC15.41■□□□□ 0.06
LIG3P49916 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.41■□□□□ 0.06
LIG3P49916 MIR497HG-202ENST00000572453 3838 ntBASIC15.41■□□□□ 0.06
LIG3P49916 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.41■□□□□ 0.06
LIG3P49916 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 AL512343.1-201ENST00000605837 169 ntBASIC15.41■□□□□ 0.06
LIG3P49916 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIG3P49916 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIG3P49916 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LIG3P49916 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
LIG3P49916 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
LIG3P49916 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.4■□□□□ 0.06
LIG3P49916 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.4■□□□□ 0.06
LIG3P49916 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LIG3P49916 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 KRT43P-201ENST00000434019 910 ntBASIC15.4■□□□□ 0.06
LIG3P49916 AC012441.1-201ENST00000446669 685 ntBASIC15.4■□□□□ 0.06
LIG3P49916 CROCCP4-201ENST00000457096 498 ntBASIC15.4■□□□□ 0.06
LIG3P49916 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 IGHV3-71-201ENST00000523324 359 ntBASIC15.4■□□□□ 0.06
LIG3P49916 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.4■□□□□ 0.06
LIG3P49916 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.4■□□□□ 0.06
LIG3P49916 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.4■□□□□ 0.06
LIG3P49916 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 AL022328.1-201ENST00000610050 478 ntBASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms