Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RXRBP28702 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RXRBP28702 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.41■□□□□ 0.54
RXRBP28702 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
RXRBP28702 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.41■□□□□ 0.54
RXRBP28702 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 HSD3BP1-201ENST00000286193 1111 ntBASIC18.41■□□□□ 0.54
RXRBP28702 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RXRBP28702 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC18.41■□□□□ 0.54
RXRBP28702 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC18.41■□□□□ 0.54
RXRBP28702 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RXRBP28702 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RXRBP28702 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RXRBP28702 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC18.41■□□□□ 0.54
RXRBP28702 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.4■□□□□ 0.54
RXRBP28702 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.4■□□□□ 0.54
RXRBP28702 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC18.4■□□□□ 0.54
RXRBP28702 RN7SL2-201ENST00000490232 300 ntBASIC18.4■□□□□ 0.54
RXRBP28702 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC18.4■□□□□ 0.54
RXRBP28702 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.4■□□□□ 0.54
RXRBP28702 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 MIR1587-201ENST00000583319 53 ntBASIC18.4■□□□□ 0.54
RXRBP28702 RN7SL4P-201ENST00000584058 295 ntBASIC18.4■□□□□ 0.54
RXRBP28702 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
RXRBP28702 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RXRBP28702 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RXRBP28702 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RXRBP28702 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RXRBP28702 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
RXRBP28702 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
RXRBP28702 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
RXRBP28702 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
RXRBP28702 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 CD37-203ENST00000426897 1204 ntTSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 YBX1P3-201ENST00000468366 909 ntBASIC18.39■□□□□ 0.53
RXRBP28702 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 AC106872.9-201ENST00000512437 1393 ntBASIC18.39■□□□□ 0.53
RXRBP28702 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 AC079328.2-201ENST00000561241 3354 ntBASIC18.39■□□□□ 0.53
RXRBP28702 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.39■□□□□ 0.53
RXRBP28702 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.39■□□□□ 0.53
RXRBP28702 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.39■□□□□ 0.53
RXRBP28702 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RXRBP28702 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms