Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC12.68□□□□□ -0.38
COL8A1P27658 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.68□□□□□ -0.38
COL8A1P27658 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC12.68□□□□□ -0.38
COL8A1P27658 RNA5SP406-201ENST00000516106 112 ntBASIC12.68□□□□□ -0.38
COL8A1P27658 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 COA4-204ENST00000541455 1038 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC12.68□□□□□ -0.38
COL8A1P27658 ADAM3B-201ENST00000569937 840 ntBASIC12.68□□□□□ -0.38
COL8A1P27658 AC140113.1-201ENST00000603467 169 ntBASIC12.68□□□□□ -0.38
COL8A1P27658 AL118522.1-201ENST00000611368 560 ntBASIC12.68□□□□□ -0.38
COL8A1P27658 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC12.68□□□□□ -0.38
COL8A1P27658 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC12.68□□□□□ -0.38
COL8A1P27658 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 CICP11-201ENST00000434745 2827 ntBASIC12.68□□□□□ -0.38
COL8A1P27658 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL8A1P27658 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
COL8A1P27658 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC12.68□□□□□ -0.38
COL8A1P27658 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 AC025183.3-201ENST00000623526 1482 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 AC013726.1-201ENST00000563747 2285 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC12.67□□□□□ -0.38
COL8A1P27658 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 KRT18P36-201ENST00000411618 1276 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 AL512306.1-201ENST00000432698 848 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 RGS5-216ENST00000449680 788 ntTSL 3 BASIC12.67□□□□□ -0.38
COL8A1P27658 RN7SL530P-201ENST00000485097 298 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.67□□□□□ -0.38
COL8A1P27658 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms