Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.13■□□□□ 0.33
HMGB1P09429 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGB1P09429 AC124068.2-201ENST00000569473 1109 ntBASIC17.13■□□□□ 0.33
HMGB1P09429 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 AP000346.4-201ENST00000614827 381 ntBASIC17.13■□□□□ 0.33
HMGB1P09429 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGB1P09429 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGB1P09429 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 RPSAP36-202ENST00000494591 1261 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 AL160314.3-201ENST00000556041 767 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 MIR4259-201ENST00000584466 101 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGB1P09429 AL023803.2-201ENST00000620080 638 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 AC133540.1-201ENST00000620845 1019 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 AC090386.2-201ENST00000623010 1039 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HMGB1P09429 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 AL137784.3-201ENST00000623858 2288 ntBASIC17.12■□□□□ 0.33
HMGB1P09429 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB1P09429 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB1P09429 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB1P09429 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 C1R-201ENST00000535233 2211 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HMGB1P09429 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 OR8S1-201ENST00000310194 1080 ntBASIC17.11■□□□□ 0.33
HMGB1P09429 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB1P09429 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 AC006122.1-201ENST00000493323 440 ntBASIC17.11■□□□□ 0.33
HMGB1P09429 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.11■□□□□ 0.33
HMGB1P09429 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 AC003686.1-201ENST00000550956 1034 ntBASIC17.11■□□□□ 0.33
HMGB1P09429 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGB1P09429 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGB1P09429 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms