Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AL512384.1-201ENST00000406683 331 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AL161932.2-201ENST00000435436 679 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 HMGN1P19-201ENST00000436976 333 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 INE1-201ENST00000456273 945 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC078819.1-201ENST00000547454 765 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC012085.1-201ENST00000548270 765 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 KRT90P-201ENST00000549264 1064 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC005586.2-201ENST00000563946 837 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MIR4683-201ENST00000579659 81 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC073413.1-201ENST00000603927 732 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC138951.2-201ENST00000623455 1161 ntBASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIF3AQ9Y2N7 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 TMEM14DP-201ENST00000422205 345 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 CICP12-201ENST00000455801 843 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms