Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 U91328.1-201ENST00000437528 223 ntBASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 F10-203ENST00000409306 1450 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TUBB8P4-201ENST00000511806 1324 ntBASIC11.81□□□□□ -0.52
FOXA2Q9Y261 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AC023794.5-201ENST00000564380 2157 ntBASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PDIA3P1-201ENST00000471856 1510 ntBASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AL031595.1-201ENST00000623969 4709 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AC130686.1-201ENST00000622936 2466 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AC112492.5-201ENST00000421897 457 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 FAM197Y7-201ENST00000432892 766 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 KLF2P4-201ENST00000451959 1225 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CROCCP4-201ENST00000457096 498 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ECM1P1-201ENST00000604092 1279 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AC138466.3-201ENST00000619983 221 ntBASIC11.8□□□□□ -0.52
FOXA2Q9Y261 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms