Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PDIA3P2-201ENST00000428073 158 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 XBP1P1-201ENST00000436573 652 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 MAGEA5-201ENST00000446757 942 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC073150.1-201ENST00000450406 1084 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 RTN3P1-201ENST00000536295 711 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC012044.1-201ENST00000603431 297 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AL353726.2-201ENST00000623259 884 ntBASIC13.37□□□□□ -0.27
LRFN1Q9P244 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LRFN1Q9P244 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
LRFN1Q9P244 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 AF254983.2-201ENST00000612331 135 ntBASIC13.36□□□□□ -0.27
LRFN1Q9P244 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LRFN1Q9P244 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.36□□□□□ -0.27
LRFN1Q9P244 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms